Antonio Collesei
Researcher in Bioinformatics and Computational Oncology @ IOV-IRCCS.
7th Floor North, Institute of Pediatric Research
Corso Stati Uniti, 4
Padova, Italy
I’m a researcher in Bioinformatics and Computational Oncology at the Veneto Instute of Oncology, Italy, and former Ph.D student (2020-2023) at the University of Padova. I have been part of Vandin Lab and AIDA Lab (Department of Information Engineering, University of Padova, Italy). My research mainly focuses on developing methods for omics data to unveil the underlying biology in cancer cohorts. I have also been working on machine learning models in observational and clinical studies.
I received my Master’s Degree in Bioengineering from the University of Padova in 2017, including a one-year visiting research period at the Medizinische Universität, Innsbruck, Austria, under the supervision of Zlatko Trajanoski and Francesca Finotello. Between my Master’s and Ph.D. I temporarily switched to industry, working for an italian multinational company (Inventis).
Outside of academia, I enjoy playing team sports in official tournaments (kind of competitive guy) or even pick-up games in the park. I also produce and star in short movies, occasionally winning prizes. Check out Hidden Embers on YouTube. Most of it is in italian, but we are working hard to make subtitles available.
news
Jul 30, 2024 | Finally, ALLSTAR has just been published by the journal Bioinformatics! |
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May 14, 2024 | Ph.D. defended Cum Laude in 2024 |
Mar 21, 2024 | Poster presented @ AI4H 2024 |
Jun 29, 2023 | ALLSTAR has just been accepted for a 10-minute oral presentation @ CIBB 2023, held in my home town Padova! |
May 12, 2023 | ALLSTAR has just been accepted for a 20-minute oral presentation @ ISMB/ECCB 2023! Lyon, France we’ll meet soon! 🇫🇷 |
Apr 21, 2023 | Paola graduated in Computer Science! |
Apr 18, 2023 | Poster presented @ RECOMB 2023 |
Mar 20, 2023 | ALLSTAR just got accepted as a Poster @ RECOMB 2023! Istanbul, Turkey I’m coming! 🇹🇷 |
May 2, 2022 | Lipari Summer School just accepted my application! Great speakers ahead in Sicily! 🏖️ 🤩 |
selected publications
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ALLSTAR: inference of reliAble causaL ruLes between Somatic muTAtions and canceR phenotypesBioinformatics, 2024
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Comorbidities in the Spondyloarthritis GISEA Cohort: an average treatment effect analysis on patients treated with bDMARDsClinical and experimental rheumatology, 2023
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Multi-design differential expression profiling of COVID-19 lung autopsy specimens reveals significantly deregulated inflammatory pathways and SFTPC impaired transcriptionCells, 2022